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with the number of mods made already, and many to come i expect, some mods may interfear with each other, so is there a chance of a mod manager, from one of the clever people out there.
just a thought.
You can already easeliy choose wich mods you want to play with from the launcher(that is if the mods are made as mods and not overhaules). I don't really see the need for a modmanager when it's included in the game. And if that doesn't pealse you you could try and use JSGME wich is a bit tricky to use in my opinion but maybe what your looking for.