They do for me now on the 4.0.21 beta. They seem to still be there hidden and not working the Chip Jobs but when I move them my Research and Advanced Logic income goes down
Is it intended that Undesirables automatically Resettle themselves to the Lathe though? It's a big upkeep increase when you conquer Undesirables; before you didn't pay the cost and still got Advanced Logic until they were all gone, but now that you get full benefit and full cost I think I'd like to do it manually. This would benefit from some love to the Resettlement window, maybe some of those Ctrl/Shift modifiers for large transfers, and much more info and less groups of <100 Pops.