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Playing with Synthesis as my secret tech, I am using Paragon units and they're integrated as they should because they're all cyborgs, however the Techno-Prophet reinforcements are not. Is this WAD?
I think it is, or is at least an edge case.
Can you stick a mod on the Techno-Prophet to make it Integrated? That should carry over to the reinforcements.
If you can't, I'd put something into Bugs to see if that can be fixed.